Computational genomics

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  1. Bracketing phenogenotypic limits of mammalian hybridization

    Savriama, Y., Valtonen, M., Kammonen, J. I., Rastas, P., Smolander, O-P., Lyyski, A., Häkkinen, T. J., Corfe, I. J., Gerber, S., Salazar-Ciudad, I., Paulin, L., Holm, L., Löytynoja, A., Auvinen, P. & Jernvall, J., 28 Nov 2018, In : Royal Society Open Science. 5, 11, 12 p., 180903.

    Research output: Contribution to journalArticleScientificpeer-review

  2. Opportunities and challenges in metabarcoding approaches for helminth community identification in wild mammals

    Aivelo, T. & Medlar, A., Apr 2018, In : Parasitology. 145, 5, p. 608-621 14 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  3. AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination

    Medlar, A. J., Törönen, P. & Holm, L., 2 Jul 2018, In : Nucleic Acids Research. 46, W1, p. W479-W485 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. PANNZER2: a rapid functional annotation web server

    Törönen, P., Medlar, A. & Holm, L., 2 Jul 2018, In : Nucleic Acids Research. 46, W1, p. W84-W88 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. TOPAZ: asymmetric suffix array neighbourhood search for massive protein databases

    Medlar, A. & Holm, L., 31 Jul 2018, In : BMC Bioinformatics. 19, 9 p., 278.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Mlh1 deficiency in normal mouse colon mucosa associates with chromosomally unstable colon cancer

    Pussila, M., Toronen, P., Einarsdottir, E., Katayama, S., Krjutskov, K., Holm, L., Kere, J., Peltomäki, P., Mäkinen, M. J., Linden, J. & Nyström, M., Jun 2018, In : Carcinogenesis. 39, 6, p. 788-797 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. An efficient randomised sphere cover classifier

    Younsi, R., 1 Jan 2012, In : International Journal of Data Mining, Modelling and Management (IJDMMM). 4, 2, p. 156 171 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. A Randomized Sphere Cover Classifier

    Younsi, R. & Bagnall, A., 2010, INTELLIGENT DATA ENGINEERING AND AUTOMATED LEARNING - IDEAL 2010. Fyfe, C., Tino, P., Charles, D., GarciaOsorio, C. & Yin, HJ. (eds.). Springer-Verlag, p. 234-241 8 p. (Lecture Notes in Computer Science; vol. 6283).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  9. Ensembles of random sphere cover classifiers

    Younsi, R. & Bagnall, A., Jan 2016, In : Pattern Recognition. 49, p. 213-225 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. HaploForge: a comprehensive pedigree drawing and haplotype visualization web application

    Tekman, M., Medlar, A., Mozere, M., Kleta, R. & Stanescu, H., 15 Dec 2017, In : Bioinformatics. 33, 24, p. 3871-3877 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

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