Genome-scale algorithmics

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  1. 2017
  2. emMAW: computing minimal absent words in external memory

    Héliou, A., Pissis, S. P. & Puglisi, S. J. 1 Sep 2017 In : Bioinformatics. 33, 17, p. 2746-2749 4 p.

    Publication: Contribution to journalA1 Refereed journal article

  3. Interval scheduling maximizing minimum coverage

    Mäkinen, V., Staneva, V., Tomescu, A. I., Valenzuela, D. & Wilzbach, S. 10 Jul 2017 In : Discrete Applied Mathematics. 225, p. 130-135 6 p.

    Publication: Contribution to journalA1 Refereed journal article

  4. Optimal Omnitig Listing for Safe and Complete Contig Assembly

    Cairo, M., Medvedev, P., Acosta, N. O., Rizzi, R. & Tomescu, A. I. Jul 2017 p. 29:1-29:12 29

    Publication: Conference contributionA4 Article in conference publication (refereed)

  5. Safe and Complete Contig Assembly Through Omnitigs

    Tomescu, A. I. & Medvedev, P. 1 Jun 2017 In : Journal of Computational Biology. 24, 6, p. 590-602 13 p.

    Publication: Contribution to journalA1 Refereed journal article

  6. Document retrieval on repetitive string collections

    Gagie, T., Hartikainen, A., Karhu, K., Kärkkäinen, J., Navarro, G., Puglisi, S. J. & Sirén, J. Jun 2017 In : Information Retrieval Journal. 20, 3, p. 253-291 39 p.

    Publication: Contribution to journalA1 Refereed journal article

  7. On Sets and Graphs: Perspectives on Logic and Combinatorics

    Omodeo, E. G., Policriti, A. & Tomescu, A. I. May 2017 Springer International Publishing . 275 p.

    Publication: Book/anthologyC1 Published scientific monograph

  8. Accurate self-correction of errors in long reads using de Bruijn graphs

    Salmela, L., Walve, R., Rivals, E. & Ukkonen, E. 15 Mar 2017 In : Bioinformatics. 33, 6, p. 799-806 8 p.

    Publication: Contribution to journalA1 Refereed journal article

  9. A framework for space-efficient read clustering in metagenomic samples

    Alanko, J., Cunial, F., Belazzougui, D. & Mäkinen, V. 14 Mar 2017 In : BMC Bioinformatics. 18, Suppl 3, 12 p., 59

    Publication: Contribution to journalA1 Refereed journal article

  10. Set-syllogistics meet combinatorics

    Omodeo, E., Policriti, A. & Tomescu, A. I. Feb 2017 In : MSCS : mathematical structures in computer science.. 27, 2 (Special Issue: XIV ICTCS), p. 296-310 15 p.

    Publication: Contribution to journalA1 Refereed journal article

  11. Evaluating approaches to find exon chains based on long reads

    Kuosmanen, A. E., Norri, T. S. & Mäkinen, V. A. T. 9 Jan 2017 In : Briefings in Bioinformatics. 11 p.

    Publication: Contribution to journalA1 Refereed journal article

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