Leena Salmela

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  1. Disentangled long-read de Bruijn graphs via optical maps

    Alipahani, B., Salmela, L., Puglisi, S. J., Muggli, M. & Boucher, C. 2017 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Schwartz, R. & Reinert, K. (eds.). Dagstuhl: Schloss Dagstuhl - Leibniz-Zentrum für Informatik, p. 1:1-1:14 14 p. (Leibniz International Proceedings in Informatics; vol. 88)

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  2. Variant genotyping with gap filling

    Walve, R., Salmela, L. & Mäkinen, V. 8 Sep 2017 In : PLoS One. 12, 9, 12 p., e0184608

    Research output: Contribution to journalArticle

  3. Improved algorithms for string searching problems

    Salmela, L. 2009 Espoo: Helsinki University of Technology. 141 p.

    Research output: ThesisDoctoral Thesis

  4. Automaattiset kääntäjänlaatimistehtävät

    Salmela, L. 2005 Helsinki University of Technology. 78 p.

    Research output: ThesisMaster's thesis

  5. Accurate self-correction of errors in long reads using de Bruijn graphs

    Salmela, L., Walve, R., Rivals, E. & Ukkonen, E. 15 Mar 2017 In : Bioinformatics. 33, 6, p. 799-806 8 p.

    Research output: Contribution to journalArticle

  6. Combinatorial Algorithms: 27th International Workshop, IWOCA 2016, Helsinki, Finland, August 17-19, 2016, Proceedings

    Mäkinen, V. (ed.), Puglisi, S. J. (ed.) & Salmela, L. (ed.) 2016 Cham: Springer International Publishing . 434 p. (Theoretical Computer Science and General Issues; vol. 9843)

    Research output: Book/ReportAnthology or special issue

  7. Identification of Variant Compositions in Related Strains Without Reference

    Rautiainen, M., Salmela, L. & Mäkinen, V. 2016 Algorithms for Computational Biology: Third International Conference, AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings. Botón-Fernández, M., Martín-Vide, C., Santander-Jiménez, S. & Vega-Rodríguez, M. A. (eds.). Springer International Publishing , p. 158-170 13 p. (Lecture Notes in Computer Science; vol. 9702)

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  8. Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

    Le Bras, Y., Collin, O., Monjeaud, C., Lacroix, V., Rivals, E., Lemaitre, C., Miele, V., Sacomoto, G., Marchet, C., Cazaux, B., El Aabidine, A. Z., Salmela, L., Alves-Carvalho, S., Andrieux, A., Uricaru, R. & Peterlongo, P. 11 Feb 2016 In : GigaScience. 5, 14 p., 9

    Research output: Contribution to journalArticle

  9. Gap Filling as Exact Path Length Problem

    Salmela, L., Sahlin, K., Mäkinen, V. & Tomescu, A. I. 9 May 2016 In : Journal of Computational Biology. 23, 5, p. 347-361 15 p.

    Research output: Contribution to journalArticle

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