Veli Mäkinen

Person

Highlighted publications

  1. Genome-Scale Algorithm Design: Biological Sequence Analysis in the Era of High-Throughput Sequencing

    Mäkinen, V. A. T., Belazzougui, D., Cunial, F. & Tomescu, A. I., May 2015, Cambrigde University Press. 391 p.

    Research output: Book/ReportBookScientificpeer-review

  2. Compressed representations of sequences and full-text indexes

    Ferragina, P., Manzini, G., Mäkinen, V. & Navarro, G., 2007, In : ACM transactions on algorithms.. 3, 2, p. Art. 20

    Research output: Contribution to journalArticleScientificpeer-review

  3. Dynamic entropy-compressed sequences and full-text indexes

    Mäkinen, V. & Navarro, G., 2008, In : ACM transactions on algorithms.. 4, 3, p. art. 32 38 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Compressed full-text indexes

    Navarro, G. & Mäkinen, V., 2007, In : ACM Computing Surveys. 39, 1, p. Article No. 2

    Research output: Contribution to journalArticleScientificpeer-review

  5. Indexing Graphs for Path Queries with Applications in Genome Research

    Sirén, J., Välimäki, N. & Mäkinen, V., 2014, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 11, 2, p. 375-388 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Storage and Retrieval of Highly Repetitive Sequence Collections

    Mäkinen, V., Navarro, G., Sirén, J. & Välimäki, N., 2010, In : Journal of Computational Biology. 17, 3, p. 281-308 28 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Versatile succinct representations of the bidirectional Burrows-Wheeler transform

    Belazzougui, D., Cunial, F., Kärkkäinen, J. & Mäkinen, V., 2013, Algorithms – ESA 2013: 21st Annual European Symposium, Sophia Antipolis, France, September 2-4, 2013. Proceedings. Bodlaender, H. L. & Italiano, G. F. (eds.). Springer-Verlag, p. 133-144 (Lecture Notes in Computer Science; vol. 8125).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  8. Rank and select revisited and extended

    Mäkinen, V. & Navarro, G., 2007, In : Theoretical Computer Science. 387, 3, p. 332-347 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Transposition invariant string matching

    Mäkinen, V., Navarro, G. & Ukkonen, E., 2005, In : Journal of Algorithms. 56, p. 124-153 30 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Computational pan-genomics: status, promises and challenges

    The Computational Pan-Genomics Consortium, Mäkinen, V. A. T. & Valenzuela, S. D. A., Jan 2018, In : Briefings in Bioinformatics. 19, 1, p. 118-135 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Explaining a Weighted DAG with Few Paths for Solving Genome-Guided Multi-Assembly

    Tomescu, A. I., Gagie, T., Popa, A., Rizzi, R., Kuosmanen, A. E. & Mäkinen, V. A. T., Dec 2015, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 12, 6, p. 1345-1354 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. On the complexity of Minimum Path Cover with Subpath Constraints for multi-assembly

    Rizzi, R., Tomescu, A. I. & Mäkinen, V., 10 Sep 2014, In : BMC Bioinformatics. 15, S9, p. S5

    Research output: Contribution to journalArticleScientificpeer-review

View all (117) »

Highlighted activities

  1. BMC Bioinformatics (Journal)

    Veli Mäkinen (Editor)
    20132016

    Activity: Publication peer-review and editorial work typesEditor of research journal

  2. IWOCA 2016

    Veli Mäkinen (Scientific Committee Chair)
    2016

    Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

  3. HITSEQ at ISMB/ECCB 2017

    Veli Mäkinen (Speaker: Keynote)
    25 Jul 2017

    Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

  4. ECCB workshop on Computational Pan-Genomics

    Veli Mäkinen (Speaker: Keynote)
    4 Sep 2016

    Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

  5. German Conference on Bioinformatics 2015

    Veli Mäkinen (Speaker: Keynote)
    Sep 2015

    Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

  6. RECOMB 2018

    Veli Mäkinen (Scientific Committee Member)
    Nov 2017Dec 2017

    Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

  7. WABI 2017

    Veli Mäkinen (Scientific Committee Member)
    2017

    Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

  8. ISMB 2016

    Veli Mäkinen (Scientific Committee Member)
    2016

    Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

  9. MFCS 2016

    Veli Mäkinen (Scientific Committee Member)
    2016

    Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

  10. Recomb Comparative Genomics 2015 (RECOMB-CG 2015)

    Veli Mäkinen (Scientific Committee Member)
    2015

    Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

  11. Symposium on Combinatorial Pattern Matching (CPM 2015)

    Veli Mäkinen (Scientific Committee Member)
    2015

    Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

View all (235) »

Latest prizes

  1. Hyvä tutkija -palkinto 2007

    Veli Mäkinen (Recipient), 19 Dec 2007

    Prize: Prizes and awards

View all (1) »

Latest projects

  1. Algoritmeja ja tietorakenteita yksilöiden genomien tutkimukseen

    Mäkinen, V.

    Suomen Akatemia

    01/08/201031/12/2012

    Project: Research project

View all (1) »

ID: 62021