Veli Mäkinen

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  1. Sparse Dynamic Programming on DAGs with Small Width

    Mäkinen, V., Tomescu, A. I., Kuosmanen, A., Paavilainen, T., Gagie, T. & Chikhi, R., Feb 2019, In : ACM transactions on algorithms.. 15, 2, p. Article No. 29 21 p.

    Research output: Contribution to journalArticleScientificpeer-review

  2. Applying the Positional Burrows–Wheeler Transform to All-Pairs Hamming distance

    Mäkinen, V. & Norri, T., Jun 2019, In : Information Processing Letters. 146, p. 17-19 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics

    Rizzi, R., Cairo, M., Mäkinen, V., Tomescu, A. I. & Valenzuela, D., Feb 2019, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 1, p. 23-30 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Bidirectional Variable-Order de Bruijn Graphs

    Belazzougui, D., Gagie, T., Mäkinen, V., Previtali, M. & Puglisi, S. J., Dec 2018, In : International Journal of Foundations of Computer Science. 29, 8, p. 1279-1295 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Minimum Segmentation for Pan-genomic Founder Reconstruction in Linear Time

    Norri, T., Cazaux, B., Kosolobov, D. & Mäkinen, V., 2018, 18th International Workshop on Algorithms in Bioinformatics (WABI 2018). Parida, L. & Ukkonen, E. (eds.). Dagstuhl: Schloss Dagstuhl Leibniz Center for Informatics, p. 15:1-15:15 15 p. (Leibniz International Proceedings in Informatics (LIPIcs); vol. 113).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  6. Discovery of potential causative mutations in human coding and noncoding genome with the interactive software BasePlayer

    Katainen, R., Donner, I., Cajuso, T., Kaasinen, E., Palin, K., Mäkinen, V., Aaltonen, L. A. & Pitkänen, E., Nov 2018, In : Nature Protocols. 13, 11, p. 2580-2600 21 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Editorial: Special Issue on "Combinatorial Algorithms" (IWOCA 2016)

    Makinen, V. & Puglisi, S. J., Aug 2018, In : Theory of Computing Systems. 62, 6, p. 1349-1350 2 p.

    Research output: Contribution to journalEditorialScientific

  8. A safe and complete algorithm for metagenomic assembly

    Acosta, N. O., Mäkinen, V. & Tomescu, A. I., 7 Feb 2018, In : Algorithms for Molecular Biology. 13, 12 p., 3.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Towards pan-genome read alignment to improve variation calling

    Valenzuela, D., Norri, T., Välimäki, N., Pitkänen, E. & Mäkinen, V., 9 May 2018, In : BMC Genomics. 19, 8 p., 87.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Variant genotyping with gap filling

    Walve, R., Salmela, L. & Mäkinen, V., 8 Sep 2017, In : PLoS One. 12, 9, 12 p., e0184608.

    Research output: Contribution to journalArticleScientificpeer-review

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